| Name |
Level |
| Argyle Elementary School |
Elementary |
| Charles E. Bennett Elementary School |
Elementary |
| Clay Charter Academy |
Elementary |
| Clay High School |
High |
| Clay Hill Elementary School |
Elementary |
| Clay Virtual Academy |
Other |
| Clay Virtual Franchise |
Other |
| Clay Virtual Instruction Program |
Other |
| Coppergate Elementary School |
Elementary |
| Discovery Oaks Elementary |
Elementary |
| Doctors Inlet Elementary School |
Elementary |
| Fleming Island Elementary School |
Elementary |
| Fleming Island High School |
High |
| Florida Cyber Charter Academy at Clay |
Other |
| Florida Youth Challenge Academy |
High |
| Green Cove Springs Junior High School |
Middle |
| Grove Park Elementary School |
Elementary |
| J.L. Wilkinson Elementary School |
Elementary |
| Keystone Heights Elementary |
Elementary |
| Keystone Heights Junior/Senior High |
High |
| Lake Asbury Elementary School |
Elementary |
| Lake Asbury Junior High School |
Middle |
| Lakeside Elementary School |
Elementary |
| Lakeside Junior High School |
Middle |
| Mcrae Elementary School |
Elementary |
| Middleburg Elementary School |
Elementary |
| Middleburg High School |
High |
| Montclair Elementary School |
Elementary |
| Oakleaf High School |
High |
| Oakleaf Junior High |
Middle |
| Oakleaf Village Elementary School |
Elementary |
| Orange Park Elementary School |
Elementary |
| Orange Park High School |
High |
| Orange Park Junior High School |
Middle |
| Plantation Oaks Elementary School |
Elementary |
| Rideout Elementary School |
Elementary |
| Ridgeview Elementary School |
Elementary |
| Ridgeview High School |
High |
| Robert M. Paterson Elementary |
Elementary |
| S Bryan Jennings Elementary School |
Elementary |
| Shadowlawn Elementary School |
Elementary |
| St. Johns Classical Academy |
Other |
| Swimming Pen Creek Elementary School |
Elementary |
| Thunderbolt Elementary School |
Elementary |
| Tynes Elementary School |
Elementary |
| W E Cherry Elementary School |
Elementary |
| Wilkinson Junior High School |
Middle |
